Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle

Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle

Abstract Background The trading of individual animal genotype information often involves only the exchange of the called genotypes and not necessarily the additional information required to effectively call structural variants. The main aim here was to determine if it is possible to impute copy numb...

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Bibliographic Details
Main Authors: Pierce Rafter, Isobel Claire Gormley, Andrew C. Parnell, John Francis Kearney, Donagh P. Berry
Format: Article
Language:English
Published: BMC 2020-03-01
Series:BMC Genomics
Subjects:
CNV
Bovine
PennCNV
QuantiSNP
Beagle
FImpute
Online Access:http://link.springer.com/article/10.1186/s12864-020-6627-8

Internet

http://link.springer.com/article/10.1186/s12864-020-6627-8

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