Protocols for single-cell RNA-seq and spatial gene expression integration and interactive visualization

Protocols for single-cell RNA-seq and spatial gene expression integration and interactive visualization

Summary: There is a wealth of software that utilizes single-cell RNA-seq (scRNA-seq) data to deconvolve spatial transcriptomic spots, which currently are not yet at single-cell resolution. Here we provide protocols for implementing Seurat and Giotto packages to elucidate cell-type distribution in ou...

Full description

Bibliographic Details
Main Authors: Surbhi Sona, Matthew Bradley, Angela H. Ting
Format: Article
Language:English
Published: Elsevier 2023-03-01
Series:STAR Protocols
Subjects:
Bioinformatics
Single Cell
Sequencing
RNAseq
Online Access:http://www.sciencedirect.com/science/article/pii/S2666166723000059

Internet

http://www.sciencedirect.com/science/article/pii/S2666166723000059

Similar Items