Impact of wet-lab protocols on quality of whole-genome short-read sequences from foodborne microbial pathogens

Impact of wet-lab protocols on quality of whole-genome short-read sequences from foodborne microbial pathogens

For successful elucidation of a food-borne infection chain, the availability of high-quality sequencing data from suspected microbial contaminants is a prerequisite. Commonly, those investigations are a joint effort undertaken by different laboratories and institutes. To analyze the extent of variab...

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Bibliographic Details
Main Authors: Leonie F. Forth, Erik Brinks, Grégoire Denay, Ahmad Fawzy, Stefan Fiedler, Jannika Fuchs, Anne-Catrin Geuthner, Thomas Hankeln, Ekkehard Hiller, Larissa Murr, Henning Petersen, Ralf Reiting, Christian Schäfers, Claudia Schwab, Kathrin Szabo, Andrea Thürmer, Anne Wöhlke, Jennie Fischer, Stefanie Lüth, Michaela Projahn, Kerstin Stingl, Maria Borowiak, Carlus Deneke, Burkhard Malorny, Laura Uelze
Format: Article
Language:English
Published: Frontiers Media S.A. 2023-11-01
Series:Frontiers in Microbiology
Subjects:
interlaboratory study
whole genome sequencing
protocol
quality
Campylobacter
Escherichia
Online Access:https://www.frontiersin.org/articles/10.3389/fmicb.2023.1253362/full

Internet

https://www.frontiersin.org/articles/10.3389/fmicb.2023.1253362/full

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