VESPA: an optimized protocol for accurate metabarcoding-based characterization of vertebrate eukaryotic endosymbiont and parasite assemblages

Abstract Protocols for characterizing taxonomic assemblages by deep sequencing of short DNA barcode regions (metabarcoding) have revolutionized our understanding of microbial communities and are standardized for bacteria, archaea, and fungi. Unfortunately, comparable methods for host-associated euka...

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Bibliographic Details
Main Authors: Leah A. Owens, Sagan Friant, Bruno Martorelli Di Genova, Laura J. Knoll, Monica Contreras, Oscar Noya-Alarcon, Maria G. Dominguez-Bello, Tony L. Goldberg
Format: Article
Language:English
Published: Nature Portfolio 2024-01-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-023-44521-3