Topology-based segmentation of 3D confocal images of emerging hematopoietic stem cells in the zebrafish embryo

Topology-based segmentation of 3D confocal images of emerging hematopoietic stem cells in the zebrafish embryo

We develop a novel method for image segmentation of 3D confocal microscopy images of emerging hematopoietic stem cells. The method is based on the theory of persistent homology and uses an optimal threshold to select the most persistent cycles in the persistence diagram. This enables the segmentatio...

Full description

Bibliographic Details
Main Authors: G. Nardi, L. Torcq, A. A. Schmidt, J.-C. Olivo-Marin
Format: Article
Language:English
Published: Cambridge University Press 2024-01-01
Series:Biological Imaging
Subjects:
3D segmentation
morphogenesis
persistent homology
cell evolution
meshing
Online Access:https://www.cambridge.org/core/product/identifier/S2633903X24000102/type/journal_article

Internet

https://www.cambridge.org/core/product/identifier/S2633903X24000102/type/journal_article

Similar Items