Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing

Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing

Abstract Background Freshwater ecosystems are inhabited by members of cosmopolitan bacterioplankton lineages despite the disconnected nature of these habitats. The lineages are delineated based on > 97% 16S rRNA gene sequence similarity, but their intra-lineage microdiversity and phylogeography,...

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Bibliographic Details
Main Authors: Yusuke Okazaki, Shohei Fujinaga, Michaela M. Salcher, Cristiana Callieri, Atsushi Tanaka, Ayato Kohzu, Hideo Oyagi, Hideyuki Tamaki, Shin-ichi Nakano
Format: Article
Language:English
Published: BMC 2021-01-01
Series:Microbiome
Subjects:
Freshwater bacterioplankton
Long-read amplicon sequencing
Microdiversity
PacBio
Phylogeography
Ribosomal internal transcribed spacers
Online Access:https://doi.org/10.1186/s40168-020-00974-y

Internet

https://doi.org/10.1186/s40168-020-00974-y

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