Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettes

Phage-coat proteins can be used to build synthetic biology parts. Here the authors use an oligo library and machine learning to predict and verify sequences based on binding scores.

Bibliographic Details
Main Authors: Noa Katz, Eitamar Tripto, Naor Granik, Sarah Goldberg, Orna Atar, Zohar Yakhini, Yaron Orenstein, Roee Amit
Format: Article
Language:English
Published: Nature Portfolio 2021-03-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-021-21578-6
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author Noa Katz
Eitamar Tripto
Naor Granik
Sarah Goldberg
Orna Atar
Zohar Yakhini
Yaron Orenstein
Roee Amit
author_facet Noa Katz
Eitamar Tripto
Naor Granik
Sarah Goldberg
Orna Atar
Zohar Yakhini
Yaron Orenstein
Roee Amit
author_sort Noa Katz
collection DOAJ
description Phage-coat proteins can be used to build synthetic biology parts. Here the authors use an oligo library and machine learning to predict and verify sequences based on binding scores.
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spelling doaj.art-9616667022114a1680b5c585955aa3b82022-12-21T21:20:19ZengNature PortfolioNature Communications2041-17232021-03-0112111510.1038/s41467-021-21578-6Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettesNoa Katz0Eitamar Tripto1Naor Granik2Sarah Goldberg3Orna Atar4Zohar Yakhini5Yaron Orenstein6Roee Amit7Department of Biotechnology and Food Engineering, Technion - Israel Institute of TechnologyDepartment of Biomedical Engineering, Ben-Gurion University of the NegevDepartment of Biotechnology and Food Engineering, Technion - Israel Institute of TechnologyDepartment of Biotechnology and Food Engineering, Technion - Israel Institute of TechnologyDepartment of Biotechnology and Food Engineering, Technion - Israel Institute of TechnologyDepartment of Computer Science, Technion - Israel Institute of TechnologySchool of Electrical and Computer Engineering, Ben-Gurion University of the NegevDepartment of Biotechnology and Food Engineering, Technion - Israel Institute of TechnologyPhage-coat proteins can be used to build synthetic biology parts. Here the authors use an oligo library and machine learning to predict and verify sequences based on binding scores.https://doi.org/10.1038/s41467-021-21578-6
spellingShingle Noa Katz
Eitamar Tripto
Naor Granik
Sarah Goldberg
Orna Atar
Zohar Yakhini
Yaron Orenstein
Roee Amit
Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettes
Nature Communications
title Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettes
title_full Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettes
title_fullStr Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettes
title_full_unstemmed Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettes
title_short Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettes
title_sort overcoming the design build test bottleneck for synthesis of nonrepetitive protein rna cassettes
url https://doi.org/10.1038/s41467-021-21578-6
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