A Transposon Story: From TE Content to TE Dynamic Invasion of <i>Drosophila</i> Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore

A Transposon Story: From TE Content to TE Dynamic Invasion of <i>Drosophila</i> Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore

Transposable elements (TEs) are the main components of genomes. However, due to their repetitive nature, they are very difficult to study using data obtained with short-read sequencing technologies. Here, we describe an efficient pipeline to accurately recover TE insertion (TEI) sites and sequences...

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Bibliographic Details
Main Authors: Mourdas Mohamed, Nguyet Thi-Minh Dang, Yuki Ogyama, Nelly Burlet, Bruno Mugat, Matthieu Boulesteix, Vincent Mérel, Philippe Veber, Judit Salces-Ortiz, Dany Severac, Alain Pélisson, Cristina Vieira, François Sabot, Marie Fablet, Séverine Chambeyron
Format: Article
Language:English
Published: MDPI AG 2020-07-01
Series:Cells
Subjects:
transposable elements
ONT
<i>Drosophila melanogaster</i>
<i>Drosophila simulans</i>
piRNA
Online Access:https://www.mdpi.com/2073-4409/9/8/1776

Internet

https://www.mdpi.com/2073-4409/9/8/1776

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