Using QC-Blind for Quality Control and Contamination Screening of Bacteria DNA Sequencing Data Without Reference Genome

Using QC-Blind for Quality Control and Contamination Screening of Bacteria DNA Sequencing Data Without Reference Genome

Quality control for next generation sequencing (NGS) has become increasingly important with the ever increasing importance of sequencing data for omics studies. Tools have been developed for filtering possible contaminants from species with known reference genome. Unfortunately, reference genomes fo...

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Bibliographic Details
Main Authors: Wang Xi, Yan Gao, Zhangyu Cheng, Chaoyun Chen, Maozhen Han, Pengshuo Yang, Guangzhou Xiong, Kang Ning
Format: Article
Language:English
Published: Frontiers Media S.A. 2019-07-01
Series:Frontiers in Microbiology
Subjects:
quality control
contamination screening
metagenome
next generation sequencing (NGS)
novel pipeline
Online Access:https://www.frontiersin.org/article/10.3389/fmicb.2019.01560/full

Internet

https://www.frontiersin.org/article/10.3389/fmicb.2019.01560/full

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