Effect of Processing Treatment and Modified Atmosphere Packing on Carrot’s Microbial Community Structure by Illumina MiSeq Sequencing

The aim of this study was to analyze the microbiome of carrot (<i>Daucus carota</i> subsp. <i>sativus</i>) subjected to minimal pre-treatment (rinsing in organic acid solution) and packaging in a high-oxygen modified atmosphere, and then stored for 17 days under refrigeration...

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Bibliographic Details
Main Authors: Katarzyna Ratajczak, Justyna Staninska-Pięta, Jakub Czarny, Paweł Cyplik, Łukasz Wolko, Agnieszka Piotrowska-Cyplik
Format: Article
Language:English
Published: MDPI AG 2022-04-01
Series:Molecules
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Online Access:https://www.mdpi.com/1420-3049/27/9/2830
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Summary:The aim of this study was to analyze the microbiome of carrot (<i>Daucus carota</i> subsp. <i>sativus</i>) subjected to minimal pre-treatment (rinsing in organic acid solution) and packaging in a high-oxygen modified atmosphere, and then stored for 17 days under refrigeration conditions (4 °C). The highest levels of bacteria in the carrot microbiome were characterized, at almost 78%, by bacteria belonging to the Enterobacteriaceae and Pseudomonadaceae families. Rinsing in a solution of ascorbic and citric acids resulted in the improvement of microbiological quality in the first day of storage. However, the use of a high-oxygen modified atmosphere extended the shelf life of the minimally processed product. Compared to carrots stored in air, those stored in high oxygen concentration were characterized by a greater ratio of bacteria belonging to the <i>Serratia</i> and <i>Enterobacter</i> genera, and a lower ratio belonging to the <i>Pseudomonas</i> and <i>Pantoea</i> genera. Moreover, the β-biodiversity analysis confirmed that the oxygen concentration was the main factor influencing the differentiation of the metabiomes of the stored carrots. The bacterial strains isolated from carrots identified by molecular methods were mostly pathogenic or potentially pathogenic microorganisms. Neither the minimal pre-treatment nor packaging in high-oxygen atmosphere was able to eliminate the threat of pathogenic bacteria emerging in the product.
ISSN:1420-3049