StructmRNA a BERT based model with dual level and conditional masking for mRNA representation

StructmRNA a BERT based model with dual level and conditional masking for mRNA representation

Abstract In this study, we introduce StructmRNA, a new BERT-based model that was designed for the detailed analysis of mRNA sequences and structures. The success of DNABERT in understanding the intricate language of non-coding DNA with bidirectional encoder representations is extended to mRNA with S...

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Bibliographic Details
Main Authors: Sepideh Nahali, Leila Safari, Alireza Khanteymoori, Jimmy Huang
Format: Article
Language:English
Published: Nature Portfolio 2024-10-01
Series:Scientific Reports
Subjects:
StructmRNA
mRNA sequence
Representation learning
mRNA structure
Dual-level masking
RNA degradation prediction
Online Access:https://doi.org/10.1038/s41598-024-77172-5

Internet

https://doi.org/10.1038/s41598-024-77172-5

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