Precise optical control of gene expression in C elegans using improved genetic code expansion and Cre recombinase

Synthetic strategies for optically controlling gene expression may enable the precise spatiotemporal control of genes in any combination of cells that cannot be targeted with specific promoters. We develop an improved genetic code expansion system in Caenorhabditis elegans and use it to create a pho...

Full description

Bibliographic Details
Main Authors: Lloyd Davis, Inja Radman, Angeliki Goutou, Ailish Tynan, Kieran Baxter, Zhiyan Xi, Jack M O'Shea, Jason W Chin, Sebastian Greiss
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2021-08-01
Series:eLife
Subjects:
Online Access:https://elifesciences.org/articles/67075
_version_ 1811252197099307008
author Lloyd Davis
Inja Radman
Angeliki Goutou
Ailish Tynan
Kieran Baxter
Zhiyan Xi
Jack M O'Shea
Jason W Chin
Sebastian Greiss
author_facet Lloyd Davis
Inja Radman
Angeliki Goutou
Ailish Tynan
Kieran Baxter
Zhiyan Xi
Jack M O'Shea
Jason W Chin
Sebastian Greiss
author_sort Lloyd Davis
collection DOAJ
description Synthetic strategies for optically controlling gene expression may enable the precise spatiotemporal control of genes in any combination of cells that cannot be targeted with specific promoters. We develop an improved genetic code expansion system in Caenorhabditis elegans and use it to create a photoactivatable Cre recombinase. We laser-activate Cre in single neurons within a bilaterally symmetric pair to selectively switch on expression of a loxP-controlled optogenetic channel in the targeted neuron. We use the system to dissect, in freely moving animals, the individual contributions of the mechanosensory neurons PLML/PLMR to the C. elegans touch response circuit, revealing distinct and synergistic roles for these neurons. We thus demonstrate how genetic code expansion and optical targeting can be combined to break the symmetry of neuron pairs and dissect behavioural outputs of individual neurons that cannot be genetically targeted.
first_indexed 2024-04-12T16:31:16Z
format Article
id doaj.art-9ed4db72b5494942b206e4f1f417c6b3
institution Directory Open Access Journal
issn 2050-084X
language English
last_indexed 2024-04-12T16:31:16Z
publishDate 2021-08-01
publisher eLife Sciences Publications Ltd
record_format Article
series eLife
spelling doaj.art-9ed4db72b5494942b206e4f1f417c6b32022-12-22T03:25:08ZengeLife Sciences Publications LtdeLife2050-084X2021-08-011010.7554/eLife.67075Precise optical control of gene expression in C elegans using improved genetic code expansion and Cre recombinaseLloyd Davis0Inja Radman1Angeliki Goutou2Ailish Tynan3Kieran Baxter4Zhiyan Xi5Jack M O'Shea6https://orcid.org/0000-0002-9694-7340Jason W Chin7Sebastian Greiss8https://orcid.org/0000-0001-9130-0831Centre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, United KingdomMedical Research Council Laboratory of Molecular Biology, Cambridge, United KingdomCentre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, United KingdomCentre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, United KingdomCentre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, United KingdomCentre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, United KingdomCentre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, United KingdomMedical Research Council Laboratory of Molecular Biology, Cambridge, United KingdomCentre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, United KingdomSynthetic strategies for optically controlling gene expression may enable the precise spatiotemporal control of genes in any combination of cells that cannot be targeted with specific promoters. We develop an improved genetic code expansion system in Caenorhabditis elegans and use it to create a photoactivatable Cre recombinase. We laser-activate Cre in single neurons within a bilaterally symmetric pair to selectively switch on expression of a loxP-controlled optogenetic channel in the targeted neuron. We use the system to dissect, in freely moving animals, the individual contributions of the mechanosensory neurons PLML/PLMR to the C. elegans touch response circuit, revealing distinct and synergistic roles for these neurons. We thus demonstrate how genetic code expansion and optical targeting can be combined to break the symmetry of neuron pairs and dissect behavioural outputs of individual neurons that cannot be genetically targeted.https://elifesciences.org/articles/67075genetic code expansionnon canonical amino acidsoptogeneticsCre recombinasephoto-caged amino acid
spellingShingle Lloyd Davis
Inja Radman
Angeliki Goutou
Ailish Tynan
Kieran Baxter
Zhiyan Xi
Jack M O'Shea
Jason W Chin
Sebastian Greiss
Precise optical control of gene expression in C elegans using improved genetic code expansion and Cre recombinase
eLife
genetic code expansion
non canonical amino acids
optogenetics
Cre recombinase
photo-caged amino acid
title Precise optical control of gene expression in C elegans using improved genetic code expansion and Cre recombinase
title_full Precise optical control of gene expression in C elegans using improved genetic code expansion and Cre recombinase
title_fullStr Precise optical control of gene expression in C elegans using improved genetic code expansion and Cre recombinase
title_full_unstemmed Precise optical control of gene expression in C elegans using improved genetic code expansion and Cre recombinase
title_short Precise optical control of gene expression in C elegans using improved genetic code expansion and Cre recombinase
title_sort precise optical control of gene expression in c elegans using improved genetic code expansion and cre recombinase
topic genetic code expansion
non canonical amino acids
optogenetics
Cre recombinase
photo-caged amino acid
url https://elifesciences.org/articles/67075
work_keys_str_mv AT lloyddavis preciseopticalcontrolofgeneexpressionincelegansusingimprovedgeneticcodeexpansionandcrerecombinase
AT injaradman preciseopticalcontrolofgeneexpressionincelegansusingimprovedgeneticcodeexpansionandcrerecombinase
AT angelikigoutou preciseopticalcontrolofgeneexpressionincelegansusingimprovedgeneticcodeexpansionandcrerecombinase
AT ailishtynan preciseopticalcontrolofgeneexpressionincelegansusingimprovedgeneticcodeexpansionandcrerecombinase
AT kieranbaxter preciseopticalcontrolofgeneexpressionincelegansusingimprovedgeneticcodeexpansionandcrerecombinase
AT zhiyanxi preciseopticalcontrolofgeneexpressionincelegansusingimprovedgeneticcodeexpansionandcrerecombinase
AT jackmoshea preciseopticalcontrolofgeneexpressionincelegansusingimprovedgeneticcodeexpansionandcrerecombinase
AT jasonwchin preciseopticalcontrolofgeneexpressionincelegansusingimprovedgeneticcodeexpansionandcrerecombinase
AT sebastiangreiss preciseopticalcontrolofgeneexpressionincelegansusingimprovedgeneticcodeexpansionandcrerecombinase