Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery
We present Microseek, a pipeline for virus identification and discovery based on RVDB-prot, a comprehensive, curated and regularly updated database of viral proteins. Microseek analyzes metagenomic Next Generation Sequencing (mNGS) raw data by performing quality steps, de novo assembly, and by scori...
Asıl Yazarlar: | Philippe Pérot, Thomas Bigot, Sarah Temmam, Béatrice Regnault, Marc Eloit |
---|---|
Materyal Türü: | Makale |
Dil: | English |
Baskı/Yayın Bilgisi: |
MDPI AG
2022-09-01
|
Seri Bilgileri: | Viruses |
Konular: | |
Online Erişim: | https://www.mdpi.com/1999-4915/14/9/1990 |
Benzer Materyaller
-
Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results
Yazar:: Béatrice Regnault, ve diğerleri
Baskı/Yayın Bilgisi: (2021-02-01) -
Entourage: all-in-one sequence analysis software for genome assembly, virus detection, virus discovery, and intrasample variation profiling
Yazar:: Worakorn Phumiphanjarphak, ve diğerleri
Baskı/Yayın Bilgisi: (2024-06-01) -
Design and implementation of a metagenomic analytical pipeline for respiratory pathogen detection
Yazar:: Pablo Alessandro B Viana, ve diğerleri
Baskı/Yayın Bilgisi: (2024-10-01) -
Enhanced Viral Metagenomics with Lazypipe 2
Yazar:: Ilya Plyusnin, ve diğerleri
Baskı/Yayın Bilgisi: (2023-02-01) -
MAGqual: a stand-alone pipeline to assess the quality of metagenome-assembled genomes
Yazar:: Annabel Cansdale, ve diğerleri
Baskı/Yayın Bilgisi: (2024-11-01)