An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots

An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots

Abstract Background RNA pseudoknot structures play an important role in biological processes. However, existing RNA secondary structure prediction algorithms cannot predict the pseudoknot structure efficiently. Although random matching can improve the number of base pairs, these non-consecutive base...

Full description

Bibliographic Details
Main Authors: Zhang Kai, Wang Yuting, Lv Yulin, Liu Jun, He Juanjuan
Format: Article
Language:English
Published: BMC 2019-12-01
Series:BMC Genomics
Subjects:
RNA secondary structure
Pseudoknot
Simulated annealing algorithm
Minimum free energy
Online Access:https://doi.org/10.1186/s12864-019-6300-2

Internet

https://doi.org/10.1186/s12864-019-6300-2

Similar Items