Assumptions on decision making and environment can yield multiple steady states in microbial community models

Assumptions on decision making and environment can yield multiple steady states in microbial community models

Abstract Background Microbial community simulations using genome scale metabolic networks (GSMs) are relevant for many application areas, such as the analysis of the human microbiome. Such simulations rely on assumptions about the culturing environment, affecting if the culture may reach a metabolic...

書誌詳細
主要な著者:	Axel Theorell, Jörg Stelling
フォーマット:	論文
言語:	English
出版事項:	BMC 2023-06-01
シリーズ:	BMC Bioinformatics
主題:	Microbial communities Flux balance analysis Game theory
オンライン･アクセス:	https://doi.org/10.1186/s12859-023-05325-w

類似資料

Predicting microbial interactions with approaches based on flux balance analysis: an evaluation
著者:: Clémence Joseph, 等
出版事項: (2024-01-01)

More is Different: Metabolic Modeling of Diverse Microbial Communities
著者:: Christian Diener, 等
出版事項: (2023-04-01)

Calibration and analysis of genome-based models for microbial ecology
著者:: Stilianos Louca, 等
出版事項: (2015-10-01)

Metabolic Games
著者:: Taneli Pusa, 等
出版事項: (2019-04-01)

Formation of a constructed microbial community in a nutrient-rich environment indicates bacterial interspecific competition
著者:: Jia Wang, 等
出版事項: (2024-04-01)

A Multiscale Spatiotemporal Model Including a Switch from Aerobic to Anaerobic Metabolism Reproduces Succession in the Early Infant Gut Microbiota
著者:: David M. Versluis, 等
出版事項: (2022-10-01)

Stoichiometry Based Steady-State Hepatic Flux Analysis: Computational and Experimental Aspects
著者:: Mehmet A. Orman, 等
出版事項: (2012-03-01)

Machine Learning Reveals Missing Edges and Putative Interaction Mechanisms in Microbial Ecosystem Networks
著者:: Demetrius DiMucci, 等
出版事項: (2018-10-01)

Machine Learning Reveals Missing Edges and Putative Interaction Mechanisms in Microbial Ecosystem Networks
著者:: Demetrius DiMucci, 等
出版事項: (2018-10-01)

Elucidating Plant-Microbe-Environment Interactions Through Omics-Enabled Metabolic Modelling Using Synthetic Communities
著者:: Ashley E. Beck, 等
出版事項: (2022-06-01)

Flux-balance modelling of plant metabolism
著者:: Lee James Sweetlove, 等
出版事項: (2011-08-01)

Emergent cooperation in microbial metabolism
著者:: Edwin H Wintermute, 等
出版事項: (2010-09-01)

Systems modeling approaches for microbial community studies: From metagenomics to inference of the community structure
著者:: Mark eHanemaaijer, 等
出版事項: (2015-03-01)

Towards quantitative understanding on microbial community structure and functioning: a modelling-centred approach using degradation of marine oil spills as example
著者:: Wilfred F.M. eRoling, 等
出版事項: (2014-03-01)

Understanding the host-microbe interactions using metabolic modeling
著者:: Jack Jansma, 等
出版事項: (2021-01-01)

Seasonal variations in soil chemical and microbial indicators under conventional and organic vineyards
著者:: Higo Forlan Amaral, 等
出版事項: (2022-09-01)

Examining assumptions of soil microbial ecology in the monitoring of ecological restoration
著者:: Miranda M. Hart, 等
出版事項: (2020-12-01)

Microbial laboratory evolution in the era of genome‐scale science
著者:: Tom M Conrad, 等
出版事項: (2011-07-01)

Metabolic flux simulation of microbial systems based on optimal planning algorithms
著者:: Chen Yang, 等
出版事項: (2023-06-01)

Uses of Multi-Objective Flux Analysis for Optimization of Microbial Production of Secondary Metabolites
著者:: Marc Griesemer, 等
出版事項: (2023-08-01)

HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology
著者:: Christoph Gille, 等
出版事項: (2010-09-01)

Quantitative in silico analysis of neurotransmitter pathways under steady state conditions
著者:: Erkki eSomersalo, 等
出版事項: (2013-10-01)

Emergence of microbial networks as response to hostile environments
著者:: Dario eMadeo, 等
出版事項: (2014-08-01)

Flux sampling in genome-scale metabolic modeling of microbial communities
著者:: Patrick E. Gelbach, 等
出版事項: (2024-01-01)

Microbial biotechnology : energy and environment /
著者:: Arora, Rajesh
出版事項: (c201)

Transporter annotations are holding up progress in metabolic modeling
著者:: John Casey, 等
出版事項: (2024-07-01)

Environment, poverty and the steady state economy
著者:: Theodore Lianos
出版事項: (2019-06-01)

Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted Metabolomics
著者:: Ellen Kuang, 等
出版事項: (2020-04-01)

The evaluation of microbial contamination in the working environment of tanneries
著者:: Justyna Skóra, 等
出版事項: (2014-02-01)

On Balanced Host Games: A Sufficient Condition for Non-Emptiness of the Core
著者:: Yan-An Hwang, 等
出版事項: (2022-10-01)

How Digital Strategy and Management Games Can Facilitate the Practice of Dynamic Decision-Making
著者:: André Czauderna, 等
出版事項: (2020-04-01)

Quantifying the contribution of microbial immigration in engineered water systems
著者:: Ran Mei, 等
出版事項: (2019-11-01)

A wooded riparian strip set up for nitrogen removal can affect the water flux microbial composition
著者:: Mizanur Md. Rahman, 等
出版事項: (2014-02-01)

Ex Post Nash Equilibrium in Linear Bayesian Games for Decision Making in Multi-Environments
著者:: Abbas Edalat, 等
出版事項: (2018-10-01)

Use of Microbial Consortia in Bioremediation of Metalloid Polluted Environments
著者:: Elham Lashani, 等
出版事項: (2023-03-01)

Interrogation of Internal Workings in Microbial Community Assembly: Play a Game through a Behavioral Network?
著者:: Qian Wang, 等
出版事項: (2019-10-01)

Surface Mass-Balance Gradients From Elevation and Ice Flux Data in the Columbia Basin, Canada
著者:: Ben M. Pelto, 等
出版事項: (2021-07-01)

Estimation of actual evapotranspiration and water requirement of rose (Rosa damascena Mill.) using SEBAL algorithm
著者:: Ali Morshedi
出版事項: (2023-09-01)

Revised eddy covariance flux calculation methodologies – effect on urban energy balance
著者:: Annika Nordbo, 等
出版事項: (2012-04-01)

Viral-Mediated Microbe Mortality Modulated by Ocean Acidification and Eutrophication: Consequences for the Carbon Fluxes Through the Microbial Food Web
著者:: Andrea Malits, 等
出版事項: (2021-04-01)