GraphSNP: an interactive distance viewer for investigating outbreaks and transmission networks using a graph approach

GraphSNP: an interactive distance viewer for investigating outbreaks and transmission networks using a graph approach

Abstract Background Cluster and transmission analysis utilising pairwise SNP distance are increasingly used in genomic epidemiological studies. However, current methods are often challenging to install and use, and lack interactive functionalities for easy data exploration. Results GraphSNP is an in...

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Bibliographic Details
Main Authors: Budi Permana, Scott A. Beatson, Brian M. Forde
Format: Article
Language:English
Published: BMC 2023-05-01
Series:BMC Bioinformatics
Subjects:
SNP distance
Genomic epidemiology
Visualisation
Cluster and transmission analysis
Online Access:https://doi.org/10.1186/s12859-023-05332-x

Internet

https://doi.org/10.1186/s12859-023-05332-x

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