aRNAque: an evolutionary algorithm for inverse pseudoknotted RNA folding inspired by Lévy flights
Abstract Background We study in this work the inverse folding problem for RNA, which is the discovery of sequences that fold into given target secondary structures. Results We implement a Lévy mutation scheme in an updated version of aRNAque an evolutionary inverse folding algorithm and apply it to...
Main Authors: | Nono S. C. Merleau, Matteo Smerlak |
---|---|
Format: | Article |
Language: | English |
Published: |
BMC
2022-08-01
|
Series: | BMC Bioinformatics |
Subjects: | |
Online Access: | https://doi.org/10.1186/s12859-022-04866-w |
Similar Items
-
Automated design of dynamic programming schemes for RNA folding with pseudoknots
by: Bertrand Marchand, et al.
Published: (2023-12-01) -
Multi-objective genetic algorithm for pseudoknotted RNA sequence design
by: Akito eTaneda
Published: (2012-04-01) -
Survey of Lévy Flight-Based Metaheuristics for Optimization
by: Juan Li, et al.
Published: (2022-08-01) -
First passage and first hitting times of Lévy flights and Lévy walks
by: Vladimir V Palyulin, et al.
Published: (2019-01-01) -
A Novel Ant Colony Optimization Algorithm With Levy Flight
by: Yahui Liu, et al.
Published: (2020-01-01)