aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
Summary: Dental calculus samples are modeled as a mixture of DNA coming from dental plaque and contaminants. Current computational decontamination methods such as Recentrifuge and DeconSeq require either a reference database or sequenced negative controls, and therefore have limited use cases. We pr...
Main Authors: | Camila Duitama González, Samarth Rangavittal, Riccardo Vicedomini, Rayan Chikhi, Hugues Richard |
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Format: | Article |
Language: | English |
Published: |
Elsevier
2023-11-01
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Series: | iScience |
Subjects: | |
Online Access: | http://www.sciencedirect.com/science/article/pii/S258900422302134X |
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