Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters

Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters

Abstract Background The Basic Local Alignment Search Tool (BLAST) is a suite of commonly used algorithms for identifying matches between biological sequences. The user supplies a database file and query file of sequences for BLAST to find identical sequences between the two. The typical millions of...

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Bibliographic Details
Main Authors: Trinity Cheng, Pei-Ju Chin, Kenny Cha, Nicholas Petrick, Mike Mikailov
Format: Article
Language:English
Published: BMC 2022-12-01
Series:BMC Bioinformatics
Subjects:
BLAST
High performance computing (HPC)
Load balancing
Parallelization
Performance model
Profiling
Online Access:https://doi.org/10.1186/s12859-022-05029-7

Internet

https://doi.org/10.1186/s12859-022-05029-7

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