Extensive sequence duplication in Arabidopsis revealed by pseudo-heterozygosity

Extensive sequence duplication in Arabidopsis revealed by pseudo-heterozygosity

Abstract Background It is apparent that genomes harbor much structural variation that is largely undetected for technical reasons. Such variation can cause artifacts when short-read sequencing data are mapped to a reference genome. Spurious SNPs may result from mapping of reads to unrecognized dupli...

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Bibliographic Details
Main Authors: Benjamin Jaegle, Rahul Pisupati, Luz Mayela Soto-Jiménez, Robin Burns, Fernando A. Rabanal, Magnus Nordborg
Format: Article
Language:English
Published: BMC 2023-03-01
Series:Genome Biology
Subjects:
Structural variation
Gene duplication
GWAS
SNP calling
Methylation
Online Access:https://doi.org/10.1186/s13059-023-02875-3

Internet

https://doi.org/10.1186/s13059-023-02875-3

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