SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration

SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration

Abstract Motivation Computational RNA secondary structure prediction by free energy minimization is indispensable for analyzing structural RNAs and their interactions. These methods find the structure with the minimum free energy (MFE) among exponentially many possible structures and have a restrict...

Szczegółowa specyfikacja

Opis bibliograficzny
Główni autorzy: Mateo Gray, Sebastian Will, Hosna Jabbari
Format: Artykuł
Język:English
Wydane: BMC 2024-03-01
Seria:Algorithms for Molecular Biology
Hasła przedmiotowe:
RNA
MFE
Secondary structure prediction
Dangle
Sparsification
Space complexity
Dostęp online:https://doi.org/10.1186/s13015-024-00256-4

Internet

https://doi.org/10.1186/s13015-024-00256-4

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