SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration

SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration

Abstract Motivation Computational RNA secondary structure prediction by free energy minimization is indispensable for analyzing structural RNAs and their interactions. These methods find the structure with the minimum free energy (MFE) among exponentially many possible structures and have a restrict...

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Bibliographic Details
Main Authors: Mateo Gray, Sebastian Will, Hosna Jabbari
Format: Article
Language:English
Published: BMC 2024-03-01
Series:Algorithms for Molecular Biology
Subjects:
RNA
MFE
Secondary structure prediction
Dangle
Sparsification
Space complexity
Online Access:https://doi.org/10.1186/s13015-024-00256-4

Internet

https://doi.org/10.1186/s13015-024-00256-4

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