ADEPT: a domain independent sequence alignment strategy for gpu architectures

ADEPT: a domain independent sequence alignment strategy for gpu architectures

Abstract Background Bioinformatic workflows frequently make use of automated genome assembly and protein clustering tools. At the core of most of these tools, a significant portion of execution time is spent in determining optimal local alignment between two sequences. This task is performed with th...

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Bibliographic Details
Main Authors: Muaaz G. Awan, Jack Deslippe, Aydin Buluc, Oguz Selvitopi, Steven Hofmeyr, Leonid Oliker, Katherine Yelick
Format: Article
Language:English
Published: BMC 2020-09-01
Series:BMC Bioinformatics
Subjects:
Bioinformatics
GPU
Alignment
Protein
DNA
Online Access:http://link.springer.com/article/10.1186/s12859-020-03720-1

Internet

http://link.springer.com/article/10.1186/s12859-020-03720-1

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