SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels

SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels

Abstract Background Faced with the ongoing global pandemic of coronavirus disease, the ‘National Reference Centre for Whole Genome Sequencing of microbial pathogens: database and bioinformatic analysis’ (GENPAT) formally established at the ‘Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Mo...

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Bibliographic Details
Main Authors: Adriano Di Pasquale, Nicolas Radomski, Iolanda Mangone, Paolo Calistri, Alessio Lorusso, Cesare Cammà
Format: Article
Language:English
Published: BMC 2021-10-01
Series:BMC Genomics
Subjects:
SARS-CoV-2
Surveillance
Italy
Abruzzo
Hamming distances
Minimum spanning tree
Online Access:https://doi.org/10.1186/s12864-021-08112-0

Internet

https://doi.org/10.1186/s12864-021-08112-0

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