Detection of Phytophthora, Pythium, Globisporangium, Hyaloperonospora, and Plasmopara Species in High-Throughput Sequencing Data by In Silico and In Vitro Analysis Using Microbe Finder (MiFi)

Detection of Phytophthora, Pythium, Globisporangium, Hyaloperonospora, and Plasmopara Species in High-Throughput Sequencing Data by In Silico and In Vitro Analysis Using Microbe Finder (MiFi)

Species identification of plant pathogenic oomycetes based on morphology is challenging because of the limited number of variable characters available. Hence, pure culture isolation followed by internal transcribed spacer sequencing is routinely conducted for diagnostic purposes. E-probe Diagnostic...

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Bibliographic Details
Main Authors: Fernanda Proaño-Cuenca, Andrés S. Espindola, Carla D. Garzon
Format: Article
Language:English
Published: The American Phytopathological Society 2023-06-01
Series:PhytoFrontiers
Subjects:
EDNA
metagenome
MiFi
nanopore sequencing
oomycetes
Online Access:https://apsjournals.apsnet.org/doi/10.1094/PHYTOFR-04-22-0039-FI

Internet

https://apsjournals.apsnet.org/doi/10.1094/PHYTOFR-04-22-0039-FI

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