KDeep: a new memory-efficient data extraction method for accurately predicting DNA/RNA transcription factor binding sites

KDeep: a new memory-efficient data extraction method for accurately predicting DNA/RNA transcription factor binding sites

Abstract This paper addresses the crucial task of identifying DNA/RNA binding sites, which has implications in drug/vaccine design, protein engineering, and cancer research. Existing methods utilize complex neural network structures, diverse input types, and machine learning techniques for feature e...

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Bibliographic Details
Main Authors: Saeedeh Akbari Rokn Abadi, SeyedehFatemeh Tabatabaei, Somayyeh Koohi
Format: Article
Language:English
Published: BMC 2023-10-01
Series:Journal of Translational Medicine
Subjects:
Transcription factor
Binding site
k-mer
CNN
LSTM
Interpretability
Online Access:https://doi.org/10.1186/s12967-023-04593-7

Internet

https://doi.org/10.1186/s12967-023-04593-7

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