Taxonomy, Sequence Variance and Functional Profiling of the Microbial Community of Long-Ripened Cheddar Cheese Using Shotgun Metagenomics

Taxonomy, Sequence Variance and Functional Profiling of the Microbial Community of Long-Ripened Cheddar Cheese Using Shotgun Metagenomics

Shotgun metagenomic sequencing was used to investigate the diversity of the microbial community of Cheddar cheese ripened over 32 months. The changes in taxa abundance were compared from assembly-based, non-assembly-based, and mOTUs2 sequencing pipelines to delineate the community profile for each a...

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Bibliographic Details
Main Authors: Hassan Mahmoud Mohamed, Zoha Barzideh, Myra Siddiqi, Gisèle LaPointe
Format: Article
Language:English
Published: MDPI AG 2023-08-01
Series:Microorganisms
Subjects:
Cheddar cheese
metagenomics
viable bacteria
microbiota
microbial interactions
Online Access:https://www.mdpi.com/2076-2607/11/8/2052

Internet

https://www.mdpi.com/2076-2607/11/8/2052

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