A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs

A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs

ABSTRACT Constantly evolving viral populations affect the specificity of primers and the quality of genomic surveillance. This study presents a framework for the continuous optimization of sequencing efficiency for public health surveillance based on the ongoing evolution of the COVID-19 pandemic. S...

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Bibliographic Details
Main Authors: Connie Lam, Jessica Johnson-Mackinnon, Kerri Basile, Winkie Fong, Carl J.E. Suster, Mailie Gall, Jessica Agius, Shona Chandra, Jenny Draper, Elena Martinez, Alexander Drew, Qinning Wang, Sharon C. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko, Rebecca J. Rockett
Format: Article
Language:English
Published: American Society for Microbiology 2023-12-01
Series:Microbiology Spectrum
Subjects:
genomic surveillance
whole genome sequencing
public health
viral sequencing
Online Access:https://journals.asm.org/doi/10.1128/spectrum.02202-23

Internet

https://journals.asm.org/doi/10.1128/spectrum.02202-23

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