Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA

Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA

Salmonella enterica is a leading cause of bacterial foodborne and zoonotic illnesses in the United States. For this study, we applied four different whole genome sequencing (WGS)-based subtyping methods: high quality single-nucleotide polymorphism (hqSNP) analysis, whole genome multilocus sequence t...

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Bibliographic Details
Main Authors: Molly M. Leeper, Beth M. Tolar, Taylor Griswold, Eshaw Vidyaprakash, Kelley B. Hise, Grant M. Williams, Sung B. Im, Jessica C. Chen, Hannes Pouseele, Heather A. Carleton
Format: Article
Language:English
Published: Frontiers Media S.A. 2023-09-01
Series:Frontiers in Microbiology
Subjects:
Salmonella
cgMLST
wgMLST
hqSNP
surveillance
epidemiology
Online Access:https://www.frontiersin.org/articles/10.3389/fmicb.2023.1254777/full

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https://www.frontiersin.org/articles/10.3389/fmicb.2023.1254777/full

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