Python-Based Geometry Preparation and Simulation Visualization Toolkits for STEPS

STEPS is a stochastic reaction-diffusion simulation engine that implements a spatial extension of Gillespie’s Stochastic Simulation Algorithm (SSA) in complex tetrahedral geometries. An extensive Python-based interface is provided to STEPS so that it can interact with the large number of scientific...

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Bibliographic Details
Main Authors: Weiliang eChen, Erik eDe Schutter
Format: Article
Language:English
Published: Frontiers Media S.A. 2014-04-01
Series:Frontiers in Neuroinformatics
Subjects:
Online Access:http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00037/full