Comparison of gene clustering criteria reveals intrinsic uncertainty in pangenome analyses

Abstract Background A key step for comparative genomics is to group open reading frames into functionally and evolutionarily meaningful gene clusters. Gene clustering is complicated by intraspecific duplications and horizontal gene transfers that are frequent in prokaryotes. In consequence, gene clu...

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Bibliographic Details
Main Authors: Saioa Manzano-Morales, Yang Liu, Sara González-Bodí, Jaime Huerta-Cepas, Jaime Iranzo
Format: Article
Language:English
Published: BMC 2023-10-01
Series:Genome Biology
Subjects:
Online Access:https://doi.org/10.1186/s13059-023-03089-3