GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis

GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis

Abstract Background Nanopore sequencing enables portable, real-time sequencing applications, including point-of-care diagnostics and in-the-field genotyping. Achieving these outcomes requires efficient bioinformatic algorithms for the analysis of raw nanopore signal data. However, comparing raw nano...

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Bibliographic Details
Main Authors: Hasindu Gamaarachchi, Chun Wai Lam, Gihan Jayatilaka, Hiruna Samarakoon, Jared T. Simpson, Martin A. Smith, Sri Parameswaran
Format: Article
Language:English
Published: BMC 2020-08-01
Series:BMC Bioinformatics
Subjects:
Nanopore
Signal alignment
Event alignment
Methylation
GPU
GPU acceleration
Online Access:http://link.springer.com/article/10.1186/s12859-020-03697-x

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http://link.springer.com/article/10.1186/s12859-020-03697-x

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