SnakeWRAP: a Snakemake workflow to facilitate automated processing of metagenomic data through the metaWRAP pipeline [version 2; peer review: 2 approved]

Generating high-quality genome assemblies of complex microbial populations from shotgun metagenomics data is often a manually intensive task involving many computational steps. SnakeWRAP is a novel tool, implemented in the Snakemake workflow language, to automate multiple metaWRAP modules. Specifica...

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Bibliographic Details
Main Authors: John Krapohl, Brett E. Pickett
Format: Article
Language:English
Published: F1000 Research Ltd 2022-04-01
Series:F1000Research
Subjects:
Online Access:https://f1000research.com/articles/11-265/v2