Assessing the Effect of Phenotyping Scoring Systems and SNP Calling and Filtering Parameters on Detection of QTL Associated with Reaction of Brassica napus to Sclerotinia sclerotiorum

Assessing the Effect of Phenotyping Scoring Systems and SNP Calling and Filtering Parameters on Detection of QTL Associated with Reaction of Brassica napus to Sclerotinia sclerotiorum

The polyploid nature of canola (Brassica napus) represents a challenge for the accurate identification of single-nucleotide polymorphisms (SNPs) and the detection of quantitative trait loci (QTL). In this study, combinations of eight phenotyping scoring systems and six SNP calling and filtering para...

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Bibliographic Details
Main Authors: Fereshteh Shahoveisi, Atena Oladzad, Luis E. del Río Mendoza, Seyedali Hosseinirad, Susan Ruud, Bruna Rissato
Format: Article
Language:English
Published: The American Phytopathological Society 2021-07-01
Series:PhytoFrontiers
Subjects:
Brassica napus
doubled haploid population
phenotyping scoring systems
QTL mapping
Sclerotinia sclerotiorum
SNP calling and filtering
Online Access:https://apsjournals.apsnet.org/doi/10.1094/PHYTOFR-10-20-0029-R

Internet

https://apsjournals.apsnet.org/doi/10.1094/PHYTOFR-10-20-0029-R

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