GBC: a parallel toolkit based on highly addressable byte-encoding blocks for extremely large-scale genotypes of species

GBC: a parallel toolkit based on highly addressable byte-encoding blocks for extremely large-scale genotypes of species

Abstract Whole -genome sequencing projects of millions of subjects contain enormous genotypes, entailing a huge memory burden and time for computation. Here, we present GBC, a toolkit for rapidly compressing large-scale genotypes into highly addressable byte-encoding blocks under an optimized parall...

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Bibliographic Details
Main Authors: Liubin Zhang, Yangyang Yuan, Wenjie Peng, Bin Tang, Mulin Jun Li, Hongsheng Gui, Qiang Wang, Miaoxin Li
Format: Article
Language:English
Published: BMC 2023-04-01
Series:Genome Biology
Subjects:
Large-scale genotypes
Genotype compression
Highly addressable genotype blocks
Byte-encoding genotypes
Genotype management
Parallelization algorithm
Online Access:https://doi.org/10.1186/s13059-023-02906-z

Internet

https://doi.org/10.1186/s13059-023-02906-z

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