“Novel opportunities for NGS-based one health surveillance of foodborne viruses”
Abstract Foodborne viral infections rank among the top 5 causes of disease, with noroviruses and hepatitis A causing the greatest burden globally. Contamination of foods by infected food handlers or through environmental pollution are the main sources of foodborne illness, with a lesser role for con...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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BMC
2020-06-01
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| Series: | One Health Outlook |
| Subjects: | |
| Online Access: | http://link.springer.com/article/10.1186/s42522-020-00015-6 |
| _version_ | 1818280058107723776 |
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| author | Marion Desdouits Miranda de Graaf Sofia Strubbia Bas B. Oude Munnink Annelies Kroneman Françoise S. Le Guyader Marion P. G. Koopmans |
| author_facet | Marion Desdouits Miranda de Graaf Sofia Strubbia Bas B. Oude Munnink Annelies Kroneman Françoise S. Le Guyader Marion P. G. Koopmans |
| author_sort | Marion Desdouits |
| collection | DOAJ |
| description | Abstract Foodborne viral infections rank among the top 5 causes of disease, with noroviruses and hepatitis A causing the greatest burden globally. Contamination of foods by infected food handlers or through environmental pollution are the main sources of foodborne illness, with a lesser role for consumption of products from infected animals. Viral partial genomic sequencing has been used for more than two decades to track foodborne outbreaks and whole genome or metagenomics next-generation-sequencing (NGS) are new additions to the toolbox of food microbiology laboratories. We discuss developments in the field of targeted and metagenomic NGS, with an emphasis on application in food virology, the challenges and possible solutions towards future routine application. |
| first_indexed | 2024-12-12T23:43:11Z |
| format | Article |
| id | doaj.art-d8785db4167a4b4b9c4f85999016b981 |
| institution | Directory Open Access Journal |
| issn | 2524-4655 |
| language | English |
| last_indexed | 2024-12-12T23:43:11Z |
| publishDate | 2020-06-01 |
| publisher | BMC |
| record_format | Article |
| series | One Health Outlook |
| spelling | doaj.art-d8785db4167a4b4b9c4f85999016b9812022-12-22T00:07:02ZengBMCOne Health Outlook2524-46552020-06-01211810.1186/s42522-020-00015-6“Novel opportunities for NGS-based one health surveillance of foodborne viruses”Marion Desdouits0Miranda de Graaf1Sofia Strubbia2Bas B. Oude Munnink3Annelies Kroneman4Françoise S. Le Guyader5Marion P. G. Koopmans6IFREMER, Laboratoire de Microbiologie, LSEM/SG2MViroscience Department, Erasmus Medical CentreIFREMER, Laboratoire de Microbiologie, LSEM/SG2MViroscience Department, Erasmus Medical CentreCentre for Infectious Disease Control, National Institute of Public Health and the EnvironmentIFREMER, Laboratoire de Microbiologie, LSEM/SG2MViroscience Department, Erasmus Medical CentreAbstract Foodborne viral infections rank among the top 5 causes of disease, with noroviruses and hepatitis A causing the greatest burden globally. Contamination of foods by infected food handlers or through environmental pollution are the main sources of foodborne illness, with a lesser role for consumption of products from infected animals. Viral partial genomic sequencing has been used for more than two decades to track foodborne outbreaks and whole genome or metagenomics next-generation-sequencing (NGS) are new additions to the toolbox of food microbiology laboratories. We discuss developments in the field of targeted and metagenomic NGS, with an emphasis on application in food virology, the challenges and possible solutions towards future routine application.http://link.springer.com/article/10.1186/s42522-020-00015-6Next-generation sequencingMetagenomicsFoodborne virusFood virologyHuman enteric virusNorovirus |
| spellingShingle | Marion Desdouits Miranda de Graaf Sofia Strubbia Bas B. Oude Munnink Annelies Kroneman Françoise S. Le Guyader Marion P. G. Koopmans “Novel opportunities for NGS-based one health surveillance of foodborne viruses” One Health Outlook Next-generation sequencing Metagenomics Foodborne virus Food virology Human enteric virus Norovirus |
| title | “Novel opportunities for NGS-based one health surveillance of foodborne viruses” |
| title_full | “Novel opportunities for NGS-based one health surveillance of foodborne viruses” |
| title_fullStr | “Novel opportunities for NGS-based one health surveillance of foodborne viruses” |
| title_full_unstemmed | “Novel opportunities for NGS-based one health surveillance of foodborne viruses” |
| title_short | “Novel opportunities for NGS-based one health surveillance of foodborne viruses” |
| title_sort | novel opportunities for ngs based one health surveillance of foodborne viruses |
| topic | Next-generation sequencing Metagenomics Foodborne virus Food virology Human enteric virus Norovirus |
| url | http://link.springer.com/article/10.1186/s42522-020-00015-6 |
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