Topological Data Analysis of C. elegans Locomotion and Behavior

Topological Data Analysis of C. elegans Locomotion and Behavior

We apply topological data analysis to the behavior of C. elegans, a widely studied model organism in biology. In particular, we use topology to produce a quantitative summary of complex behavior which may be applied to high-throughput data. Our methods allow us to distinguish and classify videos fro...

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Bibliographic Details
Main Authors: Ashleigh Thomas, Kathleen Bates, Alex Elchesen, Iryna Hartsock, Hang Lu, Peter Bubenik
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-06-01
Series:Frontiers in Artificial Intelligence
Subjects:
persistent homology
topological data analysis
delay embedding
sliding window embedding
C. elegans
behavior phenotyping
Online Access:https://www.frontiersin.org/articles/10.3389/frai.2021.668395/full

Internet

https://www.frontiersin.org/articles/10.3389/frai.2021.668395/full

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