Substitution matrix based color schemes for sequence alignment visualization

Substitution matrix based color schemes for sequence alignment visualization

Abstract Background Visualization of multiple sequence alignments often includes colored symbols, usually characters encoding amino acids, according to some (physical) properties, such as hydrophobicity or charge. Typically, color schemes are created manually, so that equal or similar colors are ass...

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Bibliographic Details
Main Authors: Patrick Kunzmann, Benjamin E. Mayer, Kay Hamacher
Format: Article
Language:English
Published: BMC 2020-05-01
Series:BMC Bioinformatics
Subjects:
Open source
Python
Color space
Optimization
Sequence alignment
Online Access:http://link.springer.com/article/10.1186/s12859-020-3526-6

Internet

http://link.springer.com/article/10.1186/s12859-020-3526-6

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