PANDA: Processing in Magnetic Random-Access Memory-Accelerated de Bruijn Graph-Based DNA Assembly

In this work, we present an efficient Processing in MRAM-Accelerated De Bruijn Graph-based DNA Assembly platform, named PANDA, based on an optimized and hardware-friendly genome assembly algorithm. PANDA is able to assemble large-scale DNA sequence datasets from all-pair overlaps. We first design a...

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Bibliographic Details
Main Authors: Shaahin Angizi, Naima Ahmed Fahmi, Deniz Najafi, Wei Zhang, Deliang Fan
Format: Article
Language:English
Published: MDPI AG 2024-02-01
Series:Journal of Low Power Electronics and Applications
Subjects:
Online Access:https://www.mdpi.com/2079-9268/14/1/9