Benchmarking of two bioinformatic workflows for the analysis of whole-genome sequenced Staphylococcus aureus collected from patients with suspected sepsis

Benchmarking of two bioinformatic workflows for the analysis of whole-genome sequenced Staphylococcus aureus collected from patients with suspected sepsis

Abstract Background The rapidly growing area of sequencing technologies, and more specifically bacterial whole-genome sequencing, could offer applications in clinical microbiology, including species identification of bacteria, prediction of genetic antibiotic susceptibility and virulence genes simul...

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Bibliographic Details
Main Authors: Mahnaz Irani Shemirani, Diana Tilevik, Andreas Tilevik, Sanja Jurcevic, Dimitrios Arnellos, Helena Enroth, Anna-Karin Pernestig
Format: Article
Language:English
Published: BMC 2023-01-01
Series:BMC Infectious Diseases
Subjects:
Whole-genome sequencing
Antimicrobial susceptibility
S. aureus
Species identification
Virulence genes
Clinical microbiology
Online Access:https://doi.org/10.1186/s12879-022-07977-0

Internet

https://doi.org/10.1186/s12879-022-07977-0

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