Automated antimicrobial susceptibility testing and antimicrobial resistance genotyping using Illumina and Oxford Nanopore Technologies sequencing data among Enterobacteriaceae

Automated antimicrobial susceptibility testing and antimicrobial resistance genotyping using Illumina and Oxford Nanopore Technologies sequencing data among Enterobacteriaceae

Whole-genome sequencing (WGS) enables the molecular characterization of bacterial pathogens. We compared the accuracy of the Illumina and Oxford Nanopore Technologies (ONT) sequencing platforms for the determination of AMR classes and antimicrobial susceptibility testing (AST) among 181 clinical Ent...

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Bibliographic Details
Main Authors: Rick Conzemius, Yehudit Bergman, Peter Májek, Stephan Beisken, Shawna Lewis, Emily B. Jacobs, Pranita D. Tamma, Patricia J. Simner
Format: Article
Language:English
Published: Frontiers Media S.A. 2022-08-01
Series:Frontiers in Microbiology
Subjects:
antimicrobial susceptibility testing
molecular diagnostics
carbapenem-resistant Enterobacteriaceae
whole-genome sequencing
nanopore sequencing
point-of-care testing
Online Access:https://www.frontiersin.org/articles/10.3389/fmicb.2022.973605/full

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https://www.frontiersin.org/articles/10.3389/fmicb.2022.973605/full

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