Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation
Abstract Background The understanding of how microbiomes assemble, function, and evolve requires metagenomic tools that can resolve microbiota compositions at the strain level. However, the identification and tracking of microbial strains in fecal metagenomes is challenging and available tools varia...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
BMC
2022-03-01
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| Series: | Microbiome |
| Online Access: | https://doi.org/10.1186/s40168-022-01251-w |