PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors From Protein Sequences Using a Stacked Ensemble Method

PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors From Protein Sequences Using a Stacked Ensemble Method

Gram-negative bacteria use various secretion systems to deliver their secreted effectors. Among them, type IV secretion system exists widely in a variety of bacterial species, and secretes type IV secreted effectors (T4SEs), which play vital roles in host-pathogen interactions. However, experimental...

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Bibliographic Details
Main Authors: Yi Xiong, Qiankun Wang, Junchen Yang, Xiaolei Zhu, Dong-Qing Wei
Format: Article
Language:English
Published: Frontiers Media S.A. 2018-10-01
Series:Frontiers in Microbiology
Subjects:
type IV secreted effector
sequence information
position specific scoring matrix
machine learning
stacked ensemble method
Online Access:https://www.frontiersin.org/article/10.3389/fmicb.2018.02571/full

Internet

https://www.frontiersin.org/article/10.3389/fmicb.2018.02571/full

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