Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape

We describe protein interaction quantitation (PIQ), a computational method for modeling the magnitude and shape of genome-wide DNase I hypersensitivity profiles to identify transcription factor (TF) binding sites. Through the use of machine-learning techniques, PIQ identified binding sites for >7...

全面介绍

书目详细资料
Main Authors: Lewis, Sophia, van Hoff, John Peter, Karun, Vivek, Hashimoto, Tatsunori Benjamin, Sherwood, Richard I., O'Donnell, Charles William, Barkal, Amira A., Jaakkola, Tommi S., Gifford, David K.
其他作者: Massachusetts Institute of Technology. Computer Science and Artificial Intelligence Laboratory
格式: 文件
语言:en_US
出版: Nature Publishing Group 2015
在线阅读:http://hdl.handle.net/1721.1/100228
https://orcid.org/0000-0003-0521-5855
https://orcid.org/0000-0002-2199-0379
https://orcid.org/0000-0003-1709-4034