Cytosolic delivery of siRNA by ultra-high affinity dsRNA binding proteins

Protein-based methods of siRNA delivery are capable of uniquely specific targeting, but are limited by technical challenges such as low potency or poor biophysical properties. Here, we engineered a series of ultra-high affinity siRNA binders based on the viral protein p19 and developed them into siR...

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Bibliographic Details
Main Authors: Sun, Fangdi, Yang, Lucy F., Traxlmayr, Michael W., Yu, Yao, Xu, Yingda, Yang, Nicole Jie Yeon, Kauke, Monique Jacqueline, Maass, Katie F, Langer, Robert S, Anderson, Daniel Griffith, Wittrup, Karl Dane
Other Authors: Massachusetts Institute of Technology. Institute for Medical Engineering & Science
Format: Article
Published: Oxford University Press (OUP) 2018
Online Access:http://hdl.handle.net/1721.1/114564
https://orcid.org/0000-0002-0882-7761
https://orcid.org/0000-0002-0013-3941
https://orcid.org/0000-0002-0493-2863
https://orcid.org/0000-0003-4255-0492
https://orcid.org/0000-0001-5629-4798
https://orcid.org/0000-0003-2398-5896
Description
Summary:Protein-based methods of siRNA delivery are capable of uniquely specific targeting, but are limited by technical challenges such as low potency or poor biophysical properties. Here, we engineered a series of ultra-high affinity siRNA binders based on the viral protein p19 and developed them into siRNA carriers targeted to the epidermal growth factor receptor (EGFR). Combined in trans with a previously described endosome-disrupting agent composed of the pore-forming protein Perfringolysin O (PFO), potent silencing was achieved in vitro with no detectable cytotoxicity. Despite concerns that excessively strong siRNA binding could prevent the discharge of siRNA from its carrier, higher affinity continually led to stronger silencing. We found that this improvement was due to both increased uptake of siRNA into the cell and improved pharmacodynamics inside the cell. Mathematical modeling predicted the existence of an affinity optimum that maximizes silencing, after which siRNA sequestration decreases potency. Our study characterizing the affinity dependence of silencing suggests that siRNA-carrier affinity can significantly affect the intracellular fate of siRNA and may serve as a handle for improving the efficiency of delivery. The two-agent delivery system presented here possesses notable biophysical properties and potency, and provide a platform for the cytosolic delivery of nucleic acids.