Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems

The RNA-guided endonuclease Cas9 generates a double-strand break at DNA target sites complementary to the guide RNA and has been harnessed for the development of a variety of new technologies, such as genome editing. Here, we report the crystal structures of Campylobacter jejuni Cas9 (CjCas9), one o...

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Main Authors: Yamada, Mari, Watanabe, Yuto, Hirano, Hisato, Ran, F. Ann, Nakane, Takanori, Ishitani, Ryuichiro, Nishimasu, Hiroshi, Nureki, Osamu, Gootenberg, Jonathan S, Zhang, Feng
Other Authors: Massachusetts Institute of Technology. Department of Biological Engineering
Format: Article
Language:en_US
Published: Elsevier 2018
Online Access:http://hdl.handle.net/1721.1/114953
https://orcid.org/0000-0003-2782-2509
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author Yamada, Mari
Watanabe, Yuto
Hirano, Hisato
Ran, F. Ann
Nakane, Takanori
Ishitani, Ryuichiro
Nishimasu, Hiroshi
Nureki, Osamu
Gootenberg, Jonathan S
Zhang, Feng
author2 Massachusetts Institute of Technology. Department of Biological Engineering
author_facet Massachusetts Institute of Technology. Department of Biological Engineering
Yamada, Mari
Watanabe, Yuto
Hirano, Hisato
Ran, F. Ann
Nakane, Takanori
Ishitani, Ryuichiro
Nishimasu, Hiroshi
Nureki, Osamu
Gootenberg, Jonathan S
Zhang, Feng
author_sort Yamada, Mari
collection MIT
description The RNA-guided endonuclease Cas9 generates a double-strand break at DNA target sites complementary to the guide RNA and has been harnessed for the development of a variety of new technologies, such as genome editing. Here, we report the crystal structures of Campylobacter jejuni Cas9 (CjCas9), one of the smallest Cas9 orthologs, in complex with an sgRNA and its target DNA. The structures provided insights into a minimal Cas9 scaffold and revealed the remarkable mechanistic diversity of the CRISPR-Cas9 systems. The CjCas9 guide RNA contains a triple-helix structure, which is distinct from known RNA triple helices, thereby expanding the natural repertoire of RNA triple helices. Furthermore, unlike the other Cas9 orthologs, CjCas9 contacts the nucleotide sequences in both the target and non-target DNA strands and recognizes the 5′-NNNVRYM-3′ as the protospacer-adjacent motif. Collectively, these findings improve our mechanistic understanding of the CRISPR-Cas9 systems and may facilitate Cas9 engineering. Keywords: CRISPR-Cas system; Cas9; protospacer adjacent motif; RNA triplex; crystal structure
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spelling mit-1721.1/1149532022-09-29T21:14:54Z Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems Yamada, Mari Watanabe, Yuto Hirano, Hisato Ran, F. Ann Nakane, Takanori Ishitani, Ryuichiro Nishimasu, Hiroshi Nureki, Osamu Gootenberg, Jonathan S Zhang, Feng Massachusetts Institute of Technology. Department of Biological Engineering Massachusetts Institute of Technology. Department of Brain and Cognitive Sciences McGovern Institute for Brain Research at MIT Zhang, Feng Gootenberg, Jonathan S Zhang, Feng The RNA-guided endonuclease Cas9 generates a double-strand break at DNA target sites complementary to the guide RNA and has been harnessed for the development of a variety of new technologies, such as genome editing. Here, we report the crystal structures of Campylobacter jejuni Cas9 (CjCas9), one of the smallest Cas9 orthologs, in complex with an sgRNA and its target DNA. The structures provided insights into a minimal Cas9 scaffold and revealed the remarkable mechanistic diversity of the CRISPR-Cas9 systems. The CjCas9 guide RNA contains a triple-helix structure, which is distinct from known RNA triple helices, thereby expanding the natural repertoire of RNA triple helices. Furthermore, unlike the other Cas9 orthologs, CjCas9 contacts the nucleotide sequences in both the target and non-target DNA strands and recognizes the 5′-NNNVRYM-3′ as the protospacer-adjacent motif. Collectively, these findings improve our mechanistic understanding of the CRISPR-Cas9 systems and may facilitate Cas9 engineering. Keywords: CRISPR-Cas system; Cas9; protospacer adjacent motif; RNA triplex; crystal structure United States. Department of Energy (Grant DE-FG02-97ER25308) National Institute of Mental Health (U.S.) (Grant 5DP1-MH100706) National Institute of Mental Health (U.S.) (Grant 1R01-MH110049) 2018-04-25T17:38:12Z 2018-04-25T17:38:12Z 2017-03 2017-01 Article http://purl.org/eprint/type/JournalArticle 1097-2765 1097-4164 http://hdl.handle.net/1721.1/114953 Yamada, Mari et al. “Crystal Structure of the Minimal Cas9 from Campylobacter Jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems.” Molecular Cell 65, 6 (March 2017): 1109–1121 © 2017 Elsevier Inc https://orcid.org/0000-0003-2782-2509 en_US https://doi.org/10.1016/j.molcel.2017.02.007 Molecular Cell Creative Commons Attribution-NonCommercial-NoDerivs License http://creativecommons.org/licenses/by-nc-nd/4.0/ application/pdf Elsevier Prof. Zhang via Courtney Crummett
spellingShingle Yamada, Mari
Watanabe, Yuto
Hirano, Hisato
Ran, F. Ann
Nakane, Takanori
Ishitani, Ryuichiro
Nishimasu, Hiroshi
Nureki, Osamu
Gootenberg, Jonathan S
Zhang, Feng
Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
title Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
title_full Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
title_fullStr Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
title_full_unstemmed Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
title_short Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems
title_sort crystal structure of the minimal cas9 from campylobacter jejuni reveals the molecular diversity in the crispr cas9 systems
url http://hdl.handle.net/1721.1/114953
https://orcid.org/0000-0003-2782-2509
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