EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma

Many cancer types are driven by oncogenic transcription factors that have been difficult to drug. Transcriptional inhibitors, however, may offer inroads into targeting these cancers. Through chemical genomics screening, we identified that Ewing sarcoma is a disease with preferential sensitivity to T...

Full description

Bibliographic Details
Main Authors: Iniguez, Amanda Balboni, Stolte, Björn, Wang, Emily Jue, Conway, Amy Saur, Alexe, Gabriela, Dharia, Neekesh V., Kwiatkowski, Nicholas, Zhang, Tinghu, Abraham, Brian J., Mora, Jaume, Kalev, Peter, Leggett, Alan, Chowdhury, Dipanjan, Benes, Cyril H., Gray, Nathanael S., Stegmaier, Kimberly, Young, Richard A.
Other Authors: Massachusetts Institute of Technology. Department of Biology
Format: Article
Published: Elsevier BV 2019
Online Access:http://hdl.handle.net/1721.1/121107
https://orcid.org/0000-0001-8855-8647
_version_ 1826188493441728512
author Iniguez, Amanda Balboni
Stolte, Björn
Wang, Emily Jue
Conway, Amy Saur
Alexe, Gabriela
Dharia, Neekesh V.
Kwiatkowski, Nicholas
Zhang, Tinghu
Abraham, Brian J.
Mora, Jaume
Kalev, Peter
Leggett, Alan
Chowdhury, Dipanjan
Benes, Cyril H.
Gray, Nathanael S.
Stegmaier, Kimberly
Young, Richard A.
author2 Massachusetts Institute of Technology. Department of Biology
author_facet Massachusetts Institute of Technology. Department of Biology
Iniguez, Amanda Balboni
Stolte, Björn
Wang, Emily Jue
Conway, Amy Saur
Alexe, Gabriela
Dharia, Neekesh V.
Kwiatkowski, Nicholas
Zhang, Tinghu
Abraham, Brian J.
Mora, Jaume
Kalev, Peter
Leggett, Alan
Chowdhury, Dipanjan
Benes, Cyril H.
Gray, Nathanael S.
Stegmaier, Kimberly
Young, Richard A.
author_sort Iniguez, Amanda Balboni
collection MIT
description Many cancer types are driven by oncogenic transcription factors that have been difficult to drug. Transcriptional inhibitors, however, may offer inroads into targeting these cancers. Through chemical genomics screening, we identified that Ewing sarcoma is a disease with preferential sensitivity to THZ1, a covalent small-molecule CDK7/12/13 inhibitor. The selective CDK12/13 inhibitor, THZ531, impairs DNA damage repair in an EWS/FLI-dependent manner, supporting a synthetic lethal relationship between response to THZ1/THZ531 and EWS/FLI expression. The combination of these molecules with PARP inhibitors showed striking synergy in cell viability and DNA damage assays in vitro and in multiple models of Ewing sarcoma, including a PDX, in vivo without hematopoietic toxicity. Iniguez et al. find that inhibition of CDK12 is synthetic lethal with EWS/FLI expression. CDK12/13 inhibitors impair DNA damage repair in cells expressing EWS/FLI, and the combination of CDK12/13 and PARP inhibitors synergistically reduces tumor growth and extends survival in Ewing sarcoma mouse models.
first_indexed 2024-09-23T08:00:23Z
format Article
id mit-1721.1/121107
institution Massachusetts Institute of Technology
last_indexed 2024-09-23T08:00:23Z
publishDate 2019
publisher Elsevier BV
record_format dspace
spelling mit-1721.1/1211072022-09-30T01:38:46Z EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma Iniguez, Amanda Balboni Stolte, Björn Wang, Emily Jue Conway, Amy Saur Alexe, Gabriela Dharia, Neekesh V. Kwiatkowski, Nicholas Zhang, Tinghu Abraham, Brian J. Mora, Jaume Kalev, Peter Leggett, Alan Chowdhury, Dipanjan Benes, Cyril H. Gray, Nathanael S. Stegmaier, Kimberly Young, Richard A. Massachusetts Institute of Technology. Department of Biology Whitehead Institute for Biomedical Research Young, Richard A Many cancer types are driven by oncogenic transcription factors that have been difficult to drug. Transcriptional inhibitors, however, may offer inroads into targeting these cancers. Through chemical genomics screening, we identified that Ewing sarcoma is a disease with preferential sensitivity to THZ1, a covalent small-molecule CDK7/12/13 inhibitor. The selective CDK12/13 inhibitor, THZ531, impairs DNA damage repair in an EWS/FLI-dependent manner, supporting a synthetic lethal relationship between response to THZ1/THZ531 and EWS/FLI expression. The combination of these molecules with PARP inhibitors showed striking synergy in cell viability and DNA damage assays in vitro and in multiple models of Ewing sarcoma, including a PDX, in vivo without hematopoietic toxicity. Iniguez et al. find that inhibition of CDK12 is synthetic lethal with EWS/FLI expression. CDK12/13 inhibitors impair DNA damage repair in cells expressing EWS/FLI, and the combination of CDK12/13 and PARP inhibitors synergistically reduces tumor growth and extends survival in Ewing sarcoma mouse models. 2019-03-26T17:10:19Z 2019-03-26T17:10:19Z 2018-02 2019-03-15T12:42:01Z Article http://purl.org/eprint/type/JournalArticle 15356108 1535-6108 http://hdl.handle.net/1721.1/121107 Iniguez, Amanda Balboni, Björn Stolte, Emily Jue Wang, Amy Saur Conway, Gabriela Alexe, Neekesh V. Dharia, Nicholas Kwiatkowski, et al. “EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma.” Cancer Cell 33, no. 2 (February 2018): 202–216.e6. © 2017 Elsevier Inc. https://orcid.org/0000-0001-8855-8647 http://dx.doi.org/10.1016/J.CCELL.2017.12.009 Cancer Cell Creative Commons Attribution-NonCommercial-NoDerivs License http://creativecommons.org/licenses/by-nc-nd/4.0/ application/pdf Elsevier BV PMC
spellingShingle Iniguez, Amanda Balboni
Stolte, Björn
Wang, Emily Jue
Conway, Amy Saur
Alexe, Gabriela
Dharia, Neekesh V.
Kwiatkowski, Nicholas
Zhang, Tinghu
Abraham, Brian J.
Mora, Jaume
Kalev, Peter
Leggett, Alan
Chowdhury, Dipanjan
Benes, Cyril H.
Gray, Nathanael S.
Stegmaier, Kimberly
Young, Richard A.
EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma
title EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma
title_full EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma
title_fullStr EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma
title_full_unstemmed EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma
title_short EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma
title_sort ews fli confers tumor cell synthetic lethality to cdk12 inhibition in ewing sarcoma
url http://hdl.handle.net/1721.1/121107
https://orcid.org/0000-0001-8855-8647
work_keys_str_mv AT iniguezamandabalboni ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT stoltebjorn ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT wangemilyjue ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT conwayamysaur ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT alexegabriela ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT dharianeekeshv ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT kwiatkowskinicholas ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT zhangtinghu ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT abrahambrianj ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT morajaume ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT kalevpeter ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT leggettalan ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT chowdhurydipanjan ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT benescyrilh ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT graynathanaels ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT stegmaierkimberly ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma
AT youngricharda ewsfliconferstumorcellsyntheticlethalitytocdk12inhibitioninewingsarcoma