An FPGA aligner for short read mapping

The rapid growth of short read datasets poses a new challenge to the mapping of short reads to a reference genome in terms of sensitivity and execution speed. In this work, we present a parallel architecture for short read mapping utilizing field programmable gate array (FPGA)-based hardware. The co...

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Bibliographic Details
Main Authors: Chen, Yupeng, Schmidt, Bertil, Maksell, Douglas L.
Other Authors: School of Computer Engineering
Format: Conference Paper
Language:English
Published: 2013
Subjects:
Online Access:https://hdl.handle.net/10356/101801
http://hdl.handle.net/10220/13121