BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis

BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis

Spatial omics data are clustered to define both cell types and tissue domains. We present Building Aggregates with a Neighborhood Kernel and Spatial Yardstick (BANKSY), an algorithm that unifies these two spatial clustering problems by embedding cells in a product space of their own and the local ne...

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Bibliographic Details
Main Authors: Singhal, Vipul, Chou, Nigel, Lee, Joseph, Yue, Yifei, Liu, Jinyue, Chock, Wan Kee, Lin, Li, Chang, Yun-Ching, Teo, Erica Mei Ling, Aow, Jonathan, Lee, Hwee Kuan, Chen, Kok Hao, Prabhakar, Shyam
Other Authors: School of Biological Sciences
Format: Journal Article
Language:English
Published: 2024
Subjects:
Medicine, Health and Life Sciences
Gene Expression Profiling
Benchmarking
Online Access:https://hdl.handle.net/10356/178723

Internet

https://hdl.handle.net/10356/178723

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