R-loop immunoprecipitation: a method to detect R-loop interacting factors

R-loop immunoprecipitation: a method to detect R-loop interacting factors

R-loops are non-B-DNA structures consisting of an RNA/DNA hybrid and a displaced single-stranded DNA. They arise during transcription and play important biological roles. However, perturbation of R-loop levels represents a source of DNA damage and genome instability resulting in human diseases, incl...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awduron:	Beghè, C, Gromak, N
Fformat:	Book section
Iaith:	English
Cyhoeddwyd:	Springer 2022

Eitemau Tebyg

Hypoxia-induced transcriptional stress is mediated by ROS-induced R-loops
gan: Ma, TS, et al.
Cyhoeddwyd: (2023)

Out of balance: R-loops in human disease
gan: Groh, M, et al.
Cyhoeddwyd: (2014)

APOBEC3B regulates R-loops and promotes transcription-associated mutagenesis in cancer
gan: McCann, JL, et al.
Cyhoeddwyd: (2023)

Out of balance: R-loops in human disease.
gan: Matthias Groh, et al.
Cyhoeddwyd: (2014-09-01)

SOSS-INTAC: a new gatekeeper of genomic integrity at the interface of transcription and R-loops
gan: Gromak, N
Cyhoeddwyd: (2023)

R-loopDB: a database for R-loop forming sequences (RLFS) and R-loops
gan: Jenjaroenpun, Piroon, et al.
Cyhoeddwyd: (2017)

R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome
gan: Groh, M, et al.
Cyhoeddwyd: (2014)

RNA/DNA hybrid interactome identifies DXH9 as a molecular player in transcriptional termination and R-loop-associated DNA damage
gan: Cristini, A, et al.
Cyhoeddwyd: (2018)

R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome.
gan: Matthias Groh, et al.
Cyhoeddwyd: (2014-05-01)

R-loop induced G-quadruplex in non-template promotes transcription by successive R-loop formation
gan: Chun-Ying Lee, et al.
Cyhoeddwyd: (2020-07-01)

RNA/DNA Hybrid Interactome Identifies DXH9 as a Molecular Player in Transcriptional Termination and R-Loop-Associated DNA Damage
gan: Agnese Cristini, et al.
Cyhoeddwyd: (2018-05-01)

R-loops in normal and malignant hematopoiesis
gan: Mayumi Hirayama, et al.
Cyhoeddwyd: (2023-12-01)

Dual processing of R-loops and topoisomerase I induces transcription-dependent DNA double-strand breaks
gan: Cristini, A, et al.
Cyhoeddwyd: (2019)

TDP-43 mutations link Amyotrophic Lateral Sclerosis with R-loop homeostasis and R loop-mediated DNA damage.
gan: Marta Giannini, et al.
Cyhoeddwyd: (2020-12-01)

The splicing factor XAB2 interacts with ERCC1-XPF and XPG for R-loop processing
gan: Evi Goulielmaki, et al.
Cyhoeddwyd: (2021-05-01)

CircR-loop: a novel RNA:DNA interaction on genome instability
gan: Xinming Su, et al.
Cyhoeddwyd: (2024-06-01)

Protocol for detection of in vitro R-loop formation using dot blots
gan: Jack W. Dowling, et al.
Cyhoeddwyd: (2024-03-01)

RNase H2, mutated in Aicardi‐Goutières syndrome, resolves co-transcriptional R-loops to prevent DNA breaks and inflammation
gan: Cristini, A, et al.
Cyhoeddwyd: (2022)

Role of senataxin in R-loop-mediated neurodegeneration
gan: Kannan, A, et al.
Cyhoeddwyd: (2024)

R-Loop Formation In Trans at an AGGAG Repeat
gan: Kazuya Toriumi, et al.
Cyhoeddwyd: (2013-01-01)

Regulation of R-Loops in DNA Tumor Viruses
gan: Anaiya Crowner, et al.
Cyhoeddwyd: (2024-10-01)

R-loop and diseases: the cell cycle matters
gan: Yuqin Xu, et al.
Cyhoeddwyd: (2024-04-01)

On the R-matrix realization of quantum loop algebras
gan: A. Liashyk, S. Z. Pakuliak
Cyhoeddwyd: (2022-05-01)

Histone 3 s10 phosphorylation: "caught in the R loop!".
gan: Skourti-Stathaki, K, et al.
Cyhoeddwyd: (2013)

The chromatin remodelling factor ATRX suppresses R-loops in transcribed telomeric repeats
gan: Nguyen, D, et al.
Cyhoeddwyd: (2017)

Dual Processing of R-Loops and Topoisomerase I Induces Transcription-Dependent DNA Double-Strand Breaks
gan: Agnese Cristini, et al.
Cyhoeddwyd: (2019-09-01)

The intrinsic ability of double-stranded DNA to carry out D-loop and R-loop formation
gan: Takehiko Shibata, et al.
Cyhoeddwyd: (2020-01-01)

Human immunodeficiency virus-1 induces host genomic R-loops and preferentially integrates its genome near the R-loop regions
gan: Kiwon Park, et al.
Cyhoeddwyd: (2024-12-01)

Proximity ligation assay for detection of R-Loop complexes upon DNA damage
gan: Alagia, A, et al.
Cyhoeddwyd: (2022)

Loops embedded in generalized Cayley algebras of dimension 2r,r≥2
gan: Raoul E. Cawagas
Cyhoeddwyd: (2001-01-01)

Senataxin and R-loops homeostasis: multifaced implications in carcinogenesis
gan: Veronica Gatti, et al.
Cyhoeddwyd: (2023-05-01)

R-loops: formation, function, and relevance to cell stress
gan: David F Allison, et al.
Cyhoeddwyd: (2019-01-01)

Scotogenic RνMDM at three-loop level
gan: Petar Čuljak, et al.
Cyhoeddwyd: (2015-05-01)

The role of R-loops in the pathology of trinucleotide expansion diseases
gan: Groh, M
Cyhoeddwyd: (2015)

R-loops promote antisense transcription across the mammalian genome
gan: Tan-Wong, SM, et al.
Cyhoeddwyd: (2019)

Cohesin-independent STAG proteins interact with RNA and R-loops and promote complex loading
gan: Hayley Porter, et al.
Cyhoeddwyd: (2023-04-01)

R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.
gan: Sun, Q, et al.
Cyhoeddwyd: (2013)

A Tale of Loops and Tails: The Role of Intrinsically Disordered Protein Regions in R-Loop Recognition and Phase Separation
gan: Leonardo G. Dettori, et al.
Cyhoeddwyd: (2021-06-01)

Tissue-Specific, Genome-wide Mapping of R-loops in Drosophila Using MapR
gan: Juan Jauregui-Lozano, et al.
Cyhoeddwyd: (2022-09-01)

RNase H2, mutated in Aicardi‐Goutières syndrome, resolves co-transcriptional R-loops to prevent DNA breaks and inflammation
gan: Agnese Cristini, et al.
Cyhoeddwyd: (2022-05-01)