Algorithm implementation for CNV discovery using Affymetrix and Illumina SNP array data.

Algorithm implementation for CNV discovery using Affymetrix and Illumina SNP array data.

SNP array data can be analysed for the purpose of calling SNP alleles but also for determining the absolute copy number of a certain genomic segment. Here, the method for detecting copy number (CN) change using intensity data from SNP arrays is focused on. Methods incorporating data from the two mai...

Bibliográfalaš dieđut
Váldodahkkit:	Winchester, L, Ragoussis, J
Materiálatiipa:	Journal article
Giella:	English
Almmustuhtton:	2012

Geahča maid

Comparing CNV detection methods for SNP arrays.
Dahkki: Winchester, L, et al.
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CNV discovery using SNP genotyping arrays.
Dahkki: Yau, C, et al.
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Detection, breakpoint identification and detailed characterisation of a CNV at the FRA16D site using SNP assays.
Dahkki: Winchester, L, et al.
Almmustuhtton: (2008)

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Dahkki: Wang Quan, et al.
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Effect of Combining Multiple CNV Defining Algorithms on the Reliability of CNV Calls from SNP Genotyping Data
Dahkki: Soon-Young Kim, et al.
Almmustuhtton: (2012-09-01)

Hidden Markov Model-Based CNV Detection Algorithms for Illumina Genotyping Microarrays
Dahkki: Eric L. Seiser, et al.
Almmustuhtton: (2015-01-01)

Hidden Markov Model-Based CNV Detection Algorithms for Illumina Genotyping Microarrays
Dahkki: Eric L. Seiser, et al.
Almmustuhtton: (2014-01-01)

Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays
Dahkki: Hu Shengwa, et al.
Almmustuhtton: (2009-05-01)

MethylToSNP: identifying SNPs in Illumina DNA methylation array data
Dahkki: Brenna A. LaBarre, et al.
Almmustuhtton: (2019-12-01)

OPTIMIZATION OF PLASMA CELL ENRICHMENT FOR CNV DETECTION BY SNP ARRAY AND MLPA
Dahkki: MIHAIELA LOREDANA DRAGOS, et al.
Almmustuhtton: (2022-06-01)

OpenADAM: an open source genome-wide association data management system for Affymetrix SNP arrays
Dahkki: Sham P C, et al.
Almmustuhtton: (2008-12-01)

Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays
Dahkki: Bailey Kent R, et al.
Almmustuhtton: (2010-06-01)

Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals
Dahkki: Uehara Yasuka, et al.
Almmustuhtton: (2008-09-01)

Affymetrix Genome-wide Human SNP Assay
Dahkki: Alexis Bosman
Almmustuhtton: (2016-05-01)

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery
Dahkki: Stothard Paul, et al.
Almmustuhtton: (2011-11-01)

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform
Dahkki: Kardia Sharon LR, et al.
Almmustuhtton: (2011-05-01)

A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays
Dahkki: Torring Niels, et al.
Almmustuhtton: (2007-11-01)

nuID: a universal naming scheme of oligonucleotides for Illumina, Affymetrix, and other microarrays
Dahkki: Kibbe Warren A, et al.
Almmustuhtton: (2007-05-01)

Direct integration of intensity-level data from Affymetrix and Illumina microarrays improves statistical power for robust reanalysis
Dahkki: Turnbull Arran K, et al.
Almmustuhtton: (2012-08-01)

Relative impact of key sources of systematic noise in Affymetrix and Illumina gene-expression microarray experiments
Dahkki: Kitchen Robert R, et al.
Almmustuhtton: (2011-12-01)

On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation
Dahkki: Eisenhaber Frank, et al.
Almmustuhtton: (2008-06-01)

A Single-Array-Based Method for Detecting Copy Number Variants Using Affymetrix High Density SNP Arrays and its Application to Breast Cancer
Dahkki: Ming Li, et al.
Almmustuhtton: (2014-01-01)

Performance of the Illumina GGP Bovine 100K SNP array for buffalo populations genotyping in Colombia
Dahkki: William Burgos-Paz, et al.
Almmustuhtton: (2023-11-01)

Affymetrix GeneChip system: moving from research to the clinic.
Dahkki: Ragoussis, J, et al.
Almmustuhtton: (2006)

Comprehensive analysis of affymetrix exon arrays using BioConductor.
Dahkki: Michał J Okoniewski, et al.
Almmustuhtton: (2008-02-01)

A comparison of Affymetrix gene expression arrays
Dahkki: Robinson Mark D, et al.
Almmustuhtton: (2007-11-01)

SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data
Dahkki: Pearson John V, et al.
Almmustuhtton: (2005-10-01)

Cross-Species Application of Illumina iScan Microarrays for Cost-Effective, High-Throughput SNP Discovery
Dahkki: Emily D. Fountain, et al.
Almmustuhtton: (2021-05-01)

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
Dahkki: Carvalho Benilton S, et al.
Almmustuhtton: (2011-03-01)

Exon array data analysis using affymetrix power tools and R statistical software
Dahkki: Lockstone, H
Almmustuhtton: (2011)

Improvements to previous algorithms to predict gene structure and isoform concentrations using Affymetrix Exon arrays
Dahkki: Aramburu Ander, et al.
Almmustuhtton: (2010-11-01)

GStream: improving SNP and CNV coverage on genome-wide association studies.
Dahkki: Arnald Alonso, et al.
Almmustuhtton: (2013-01-01)

Gene expression and isoform variation analysis using Affymetrix exon arrays
Dahkki: Kwan Tony, et al.
Almmustuhtton: (2009-03-01)

Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays
Dahkki: Kwan Tony, et al.
Almmustuhtton: (2008-11-01)

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
Dahkki: Tresch Achim, et al.
Almmustuhtton: (2010-04-01)

Coverage and characteristics of the Affymetrix GeneChip Human Mapping 100K SNP set.
Almmustuhtton: (2006-05-01)

High correspondence between Affymetrix exon and standard expression arrays
Dahkki: Michał J. Okoniewski, et al.
Almmustuhtton: (2007-02-01)

Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data
Dahkki: Liu Qi, et al.
Almmustuhtton: (2012-12-01)

Genome-wide CNV analysis replicates the association between <it>GSTM1</it> deletion and bladder cancer: a support for using continuous measurement from SNP-array data
Dahkki: Marenne Gaëlle, et al.
Almmustuhtton: (2012-07-01)